Mir-15-P2a

MirGeneDB ID

Sto-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

CAAUAUU

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-15-P1a Sto-Mir-15-P1b Sto-Mir-15-P1c Sto-Mir-15-P2b Sto-Mir-15-P2c

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cli-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Ete-Mir-15-P2a Gga-Mir-15-P2a Hsa-Mir-15-P2a Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Tgu-Mir-15-P2a Xtr-Mir-15-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Olfactores

Genome context
(miRNA_loci_genome)

BFAA01008186.1: 126338-126402 [+]

Precursor
(pre-Mir +30nt flank)

AAAUACAACAUUCUGAUGUCAGCAAUGCCUUAGCAGCAUGUAAAUAUUGGAGUUAAGCUCUUGUGAAAGUCCCCAAUAUUAAUUGUGCUGCUGGAGCAAGGCUGACUGCUUCUGCUGCUGCCAAA

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Structure

        10          20        30        40         50        60 
AAAUACAACAUUCUGAU--      AA   CU          UA-|       AGUUAAGCUC 
                   GUCAGC  UGC  UAGCAGCAUG   AAUAUUGG          U
                   CAGUCG  ACG  GUCGUCGUGU   UUAUAACC          U
AAACCGUCGUCGUCUUCGU      GA   AG          UAA^       CCUGAAAGUG 
   120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer site -1 on the 3p arm relative to what is annotated here.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Sto-Mir-15-P2a_5p*

MirBase accession

None

Sequence

0- UAGCAGCAUGUAAAUAUUGGAG -22

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Mature sequence

Sto-Mir-15-P2a_3p

MirBase accession

None

Sequence

42- CCAAUAUUAAUUGUGCUGCUGGA -65

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