MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID
Paralogues Cpi-Mir-15-P1a  Cpi-Mir-15-P1c  Cpi-Mir-15-P2a  Cpi-Mir-15-P2b  Cpi-Mir-15-P2c 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(chrPic1)
JH584696: 121830-121889 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUCUUGUAUUUGAGGCCUUAAAGUACUCUAGCAGCACAUCAUGGUUUGCAUGCUCUAGCAAAAAUGCGAAUCAUUAUUUGCUGCUUUGGAAAUUUAAGGAAGAGAAACAGUUGAAGAU
Get precursor sequence
Structure
        10          20        30        40        50         
GAUUCUUGUAUUUGAGG--|      GUA  CU       C  C          UGCUCU 
                   CCUUAAA   CU  AGCAGCA AU AUGGUUUGCA      A
                   GGAAUUU   GG  UCGUCGU UA UACUAAGCGU      G
UAGAAGUUGACAAAGAGAA^      AAA  UU       U  U          AAAAAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-15-P1b_5p

mirBase accessionNone
Sequence
0- UAGCAGCACAUCAUGGUUUGCA -22
Get sequence
Star sequence

Cpi-Mir-15-P1b_3p*

mirBase accessionNone
Sequence
38- CGAAUCAUUAUUUGCUGCUUUG -60
Get sequence