Mir-15-P1b

MirGeneDB ID

Oan-Mir-15-P1b

Family name

MIR-15 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-15b

Paralogues

Oan-Mir-15-P1a Oan-Mir-15-P1c Oan-Mir-15-P1d Oan-Mir-15-P2a Oan-Mir-15-P2b Oan-Mir-15-P2c Oan-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041728.1: 155378996-155379055 [+]

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P1b NC_041728.1: 155378996-155379055 [+]
Mir-15-P2b NC_041728.1: 155379151-155379211 [+]

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AAUCCUGCAUGUGGAGGCCUUGGACUGCUAUAGCAGCACAUCAUGGUUUGCAUGGUAUAGCCAAGAUGCGAAUCAUUAUUUGCUGCUUUAGAAAUUUAAGGAAAAGAAACCUUUCAAGAC

Get precursor sequence

Structure

        10          20        30        40        50         
AAUCCUGCAUGUGGAGG--|      CUG   U       C  C          UGGUAU 
                   CCUUGGA   CUA AGCAGCA AU AUGGUUUGCA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAAGCGU      G
CAGAACUUUCCAAAGAAAA^      AAA   U       U  U          AGAACC 
.       110       100        90        80        70        60