| MirGeneDB ID | Spt-Mir-15-P1b |
|---|---|
| Family name | MIR-15 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-15-P1a Spt-Mir-15-P1c Spt-Mir-15-P2a Spt-Mir-15-P2b Spt-Mir-15-P2c |
| Orthologues | Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014905.1: 2949395-2949454 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-15-P1b) |
Mir-15-P1b
QEPC01014905.1: 2949395-2949454 [+]
UCSC
Ensembl
Mir-15-P2b QEPC01014905.1: 2949560-2949615 [+] UCSC Ensembl |
| Seed | AGCAGCA |
| Precursor (pre-Mir +30nt flank) |
GAGACUUGAAUUUGAGGCCUUAAAGUACUCUAGCAGCACAUCAUGAUUUGUAUGUGAUAGCAAAGAUGCAAAUCAUUAUUUGCUGCUUAAGAAAUUUAAGGAAGAGAAACGGCUGAAGAUGet precursor sequence |
| Structure | 10 20 30 40 50 GAGACUUGAAUUUGAGG--| GUA CU C C UGUGAU CCUUAAA CU AGCAGCA AU AUGAUUUGUA A GGAAUUU GA UCGUCGU UA UACUAAACGU G UAGAAGUCGGCAAAGAGAA^ AAA AU U U AGAAAC . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Spt-Mir-15-P1b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACAUCAUGAUUUGUA -22
Get sequence
|
| Star sequence | Spt-Mir-15-P1b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CAAAUCAUUAUUUGCUGCUUAA -60
Get sequence
|
