Mir-15-P1b

MirGeneDB ID

Pbv-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-15a

Paralogues

Pbv-Mir-15-P1c Pbv-Mir-15-P2a Pbv-Mir-15-P2b Pbv-Mir-15-P2c

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE954284.1: 233025-233084 [-]

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P2b KE954284.1: 232858-232921 [-]
Mir-15-P1b KE954284.1: 233025-233084 [-]

Precursor
(pre-Mir +30nt flank)

GUCUUUUGUUCUGGAAGCCUCAAAGUACUAUAGCAGCACAUCAUGAUUUGUGUUUCAUAAUAAAUAUGCAAGUCAUUAUUUGCUGCUUUAGAAUUUUAAGGAAGAAAAUCAGUUGAAAAG

Get precursor sequence

Structure

        10          20        30        40        50         
GUCUUUUGUUCUGGAAG--|  C     A   U       C  C         GUUUCAU 
                   CCU AAAGU CUA AGCAGCA AU AUGAUUUGU       A
                   GGA UUUUA GAU UCGUCGU UA UACUGAACG       A
GAAAAGUUGACUAAAAGAA^  A     A   U       U  U         UAUAAAU 
.       110       100        90        80        70        60