MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-16c
Paralogues Pbv-Mir-15-P1b  Pbv-Mir-15-P1c  Pbv-Mir-15-P2a  Pbv-Mir-15-P2b 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958055.1: 56683-56743 [-]
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-15-P2c KE958055.1: 56683-56743 [-]
Mir-15-P1c KE958055.1: 57374-57431 [-]
Precursor
(pre-Mir +30nt flank)
CAGAAACGGAAAAGUCUGUCUGCUCUGCUUUAGCAGCACGUAAAUACUGGAGUUUAGAUGCUCUGCCCUCCAGUAUUGCUUUGCUGCUUUAGUCAAGCUGGCACAUGCUCCAGGGAAUUGC
Get precursor sequence
Structure
        10          20        30        40        50          
CAGAAACGGAAAAGUCU--|  U   CU   UU       CGUA          UUUAGAU 
                   GUC GCU  GCU  AGCAGCA    AAUACUGGAG       \
                   CGG CGA  UGA  UCGUCGU    UUAUGACCUC       G
CGUUAAGGGACCUCGUACA^  U   AC   UU       UUCG          CCGUCUC 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-15-P2c_5p

mirBase accessionMIMAT0038836
Sequence
0- UAGCAGCACGUAAAUACUGGAGU -23
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Star sequence

Pbv-Mir-15-P2c_3p*

mirBase accessionMIMAT0038837
Sequence
38- UCCAGUAUUGCUUUGCUGCUUUA -61
Get sequence