Mir-15-P2c

MirGeneDB ID

Cpo-Mir-15-P2c

Family name

MIR-15 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-503

Paralogues

Cpo-Mir-15-P1a Cpo-Mir-15-P1b Cpo-Mir-15-P1c Cpo-Mir-15-P1d Cpo-Mir-15-P2a Cpo-Mir-15-P2b Cpo-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(cavPor3)

scaffold_128: 2878959-2879021 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 scaffold_128: 2872948-2873006 [-] UCSC
Mir-450-P2 scaffold_128: 2873103-2873159 [-] UCSC
Mir-450-P1 scaffold_128: 2873272-2873328 [-] UCSC
Mir-542 scaffold_128: 2874159-2874217 [-] UCSC
Mir-15-P2c scaffold_128: 2878959-2879021 [-] UCSC
Mir-15-P1c scaffold_128: 2879319-2879377 [-] UCSC

Seed

AGCAGCG

Precursor
(pre-Mir +30nt flank)

GGACGCAGUGCCCAGCACUCAGCCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGAGGGAUUUGUGCUCUGGAGUGUUGUUUCUGCUGCCAGGGCAAGUCUGGGACUUCUACAUGGGCACAGU

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGACGCAGUGCCCAGCA--|    CCG      A                 G   UGAGGGA 
                   CUCAG   UGCCCU GCAGCGGGAACAGUACU CAG       \
                   GGGUC   ACGGGA CGUCGUCUUUGUUGUGA GUC       U
UGACACGGGUACAUCUUCA^    UGA      C                 G   UCGUGUU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-15-P2c_5p

mirBase accession

MIMAT0047307

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

Get sequence

Co-mature sequence

Cpo-Mir-15-P2c_3p

mirBase accession

MIMAT0047308

Sequence

40- GGAGUGUUGUUUCUGCUGCCAGG -63

Get sequence