MirGeneDB 3.0
MirGeneDB ID

Neu-Mir-15-P2c

Family name MIR-15 (all species)
Species Tammar Wallaby (Notamacropus eugenii)
MiRBase ID
Paralogues Neu-Mir-15-P1a  Neu-Mir-15-P1c  Neu-Mir-15-P1d  Neu-Mir-15-P2a  Neu-Mir-15-P2b  Neu-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_028372415.1_mMacEug1.pri)		 CM051820.1: 56572368-56572428 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c-v1)		 Mir-15-P2c-v2 CM051820.1: 56572367-56572429 [-] UCSC Ensembl
Mir-15-P2c-v1 CM051820.1: 56572368-56572428 [-] UCSC Ensembl
Mir-15-P1c CM051820.1: 56572597-56572654 [-] UCSC Ensembl
Variant

Neu-Mir-15-P2c-v1
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
AGGACUCCCAGUUUAAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUUAACUGGUUAAAUCCUCCAGUAUUGCCUUGCUGCUUGAGCGAGGUAGGAGCCUGGUUCAAUUGCCCCU
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Structure
        10         20         30        40        50          
AGGACUCCCAGUUUAAG-   G-|  G   CCU       CGU   A       UUAACUG 
                  CUC  GCU UGC   AGCAGCA   CAA ACUGGAG       \
                  GAG  UGG GCG   UCGUCGU   GUU UGACCUC       G
UCCCCGUUAACUUGGUCC   GA^  A   AGU       UCC   A       CUAAAUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-15-P2c-v1_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUCAAAACUGGAG -22
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Star sequence

Neu-Mir-15-P2c-v1_3p* (predicted)
mirBase accessionNone
Sequence 
39- CCAGUAUUGCCUUGCUGCUUGA -61
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Variant

Neu-Mir-15-P2c-v2
Seed UAGCAGC
Precursor
(pre-Mir +30nt flank)		 
GAGGACUCCCAGUUUAAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUUAACUGGUUAAAUCCUCCAGUAUUGCCUUGCUGCUUGAGCGAGGUAGGAGCCUGGUUCAAUUGCCCCUC
Get precursor sequence
Structure
        10         20         30        40        50        60 
GAGGACUCCCAGUUUAA-    G-|  G   CCU       CGU   A      GUUAACUG 
                  GCUC  GCU UGC   AGCAGCA   CAA ACUGGA        \
                  CGAG  UGG GCG   UCGUCGU   GUU UGACCU        G
CUCCCCGUUAACUUGGUC    GA^  A   AGU       UCC   A      CCUAAAUU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-15-P2c-v2_5p
mirBase accessionNone
Sequence 
0- CUAGCAGCACGUCAAAACUGGA -22
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Star sequence

Neu-Mir-15-P2c-v2_3p* (predicted)
mirBase accessionNone
Sequence 
41- CAGUAUUGCCUUGCUGCUUGAG -63
Get sequence