MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-15-P2c2

Family name MIR-15 (all species)
Seed AGCAGCA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-16c
Paralogues Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xla-Mir-15-P2c1 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xtr-Mir-15-P2c 
Node of Origin (locus) X. laevis
Node of Origin (family) Olfactores
Genome context
(GCF_001663975.1_XLA_v2)
NC_030739.1: 74871038-74871103 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c2)
Mir-15-P2c2 NC_030739.1: 74871038-74871103 [-] UCSC Ensembl
Mir-15-P1c2 NC_030739.1: 74872534-74872591 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACUUCUCACAUGUUCUAGCAAUCUUGCUUUAGCAGCACGUAAAUACUGGAGUUCAUCACCAUAUCUGCACUCUCCAGUAUUACUUUGCUGCUAUAUUACGAUUGCCAUACGAUUCACAUGUUCUA
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Structure
        10          20        30         40        50        60  
AACUUCUCACAUGUUCUA--      UUGCUU        C-|   A        UUCAUCACC 
                    GCAAUC      UAGCAGCA  GUAA UACUGGAG         A
                    CGUUAG      AUCGUCGU  CAUU AUGACCUC         U
AUCUUGUACACUUAGCAUAC      CAUUAU        UU^   -        UCACGUCUA 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-15-P2c2_5p

mirBase accessionMIMAT0046480
Sequence
0- UAGCAGCACGUAAAUACUGGAG -22
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Star sequence

Xla-Mir-15-P2c2_3p*

mirBase accessionMIMAT0046481
Sequence
44- CCAGUAUUACUUUGCUGCUAUA -66
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