MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-16b
Paralogues Ami-Mir-15-P1a  Ami-Mir-15-P1b  Ami-Mir-15-P1c  Ami-Mir-15-P1d  Ami-Mir-15-P2a  Ami-Mir-15-P2b  Ami-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711293.1: 2724727-2724792 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-15-P2c NW_017711293.1: 2724727-2724792 [-] UCSC
Mir-15-P1c NW_017711293.1: 2725269-2725326 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCUCUCCAAGCGGACGUGUCAGCAGUGCUCUAGCAGCACGUAAAUACUGGAGUCGAGGACUGCCUGGCUGCUCUCCAGUAUUGCAUUGCUGCUUGAGUGAGGCUGGAUCUCGGUGCCUGCCGCAGG
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Structure
        10          20        30        40        50        60  
CCUCUCCAAGCGGACGUG--|    AG     U       CGUA          UCGAGGACU 
                    UCAGC  UGCUC AGCAGCA    AAUACUGGAG         G
                    GGUCG  GUGAG UCGUCGU    UUAUGACCUC         C
GGACGCCGUCCGUGGCUCUA^    GA     U       UACG          UCGUCGGUC 
    120       110       100        90        80        70
Deep sequencing
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CommentThe Dicer cut is -1 relative to most other vertebrates examined. Although there are some 3p reads there is no corresponding 5p read so the 3p arm is predicted and the 3' end of the 5p arm adjusted given orthologous sequences.
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Ami-Mir-15-P2c_5p

mirBase accessionMIMAT0038045
Sequence
0- UAGCAGCACGUAAAUACUGGAG -22
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Star sequence

Ami-Mir-15-P2c_3p* (predicted)

mirBase accessionMIMAT0038046
Sequence
44- CCAGUAUUGCAUUGCUGCUUGA -66
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