MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-15-P2c

Family name MIR-15 (all species)
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-16b
Paralogues Mdo-Mir-15-P1a  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1d  Mdo-Mir-15-P2a  Mdo-Mir-15-P2b  Mdo-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(monDom5_add)		 X: 35734297-35734357 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c-v1)		 Mir-15-P2c-v2 X: 35734296-35734358 [-] UCSC Ensembl
Mir-15-P2c-v1 X: 35734297-35734357 [-] UCSC Ensembl
Mir-15-P1c-v1 X: 35734461-35734518 [-] UCSC Ensembl
Mir-15-P1c-v2 X: 35734461-35734518 [-] UCSC Ensembl
Variant

Mdo-Mir-15-P2c-v1
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CGUCUUGAGGCGCCCAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUCACAAAGUUCAAUCCUCCAGUAUUGCCUUGCUGCUUGAGUGAGGCAGGAGCCUUGUUCAAUUGCCCCA
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Structure
        10         20         30        40        50          
CGUCUUGAGGCGCCCAG-   G-|  G   CCU       CGU   A       UCACAAA 
                  CUC  GCU UGC   AGCAGCA   CAA ACUGGAG       \
                  GAG  CGG GUG   UCGUCGU   GUU UGACCUC       G
ACCCCGUUAACUUGUUCC   GA^  A   AGU       UCC   A       CUAACUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-15-P2c-v1_5p
mirBase accessionMIMAT0050403
Sequence 
0- UAGCAGCACGUCAAAACUGGAG -22
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Star sequence

Mdo-Mir-15-P2c-v1_3p*
mirBase accessionMIMAT0050404
Sequence 
39- CCAGUAUUGCCUUGCUGCUUGA -61
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Variant

Mdo-Mir-15-P2c-v2
Seed UAGCAGC
Precursor
(pre-Mir +30nt flank)		 
UCGUCUUGAGGCGCCCAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUCACAAAGUUCAAUCCUCCAGUAUUGCCUUGCUGCUUGAGUGAGGCAGGAGCCUUGUUCAAUUGCCCCAC
Get precursor sequence
Structure
        10         20         30        40        50        60 
UCGUCUUGAGGCGCCCA-    G-|  G   CCU       CGU   A      GUCACAAA 
                  GCUC  GCU UGC   AGCAGCA   CAA ACUGGA        \
                  CGAG  CGG GUG   UCGUCGU   GUU UGACCU        G
CACCCCGUUAACUUGUUC    GA^  A   AGU       UCC   A      CCUAACUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-15-P2c-v2_5p
mirBase accessionMIMAT0050403
Sequence 
0- CUAGCAGCACGUCAAAACUGGA -22
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Star sequence

Mdo-Mir-15-P2c-v2_3p*
mirBase accessionMIMAT0050404
Sequence 
41- CAGUAUUGCCUUGCUGCUUGAG -63
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