MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-15-P2c

Family name MIR-15 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-15-P1a  Gja-Mir-15-P1b  Gja-Mir-15-P1c  Gja-Mir-15-P2a  Gja-Mir-15-P2b  Gja-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cja-Mir-15-P2c  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Eca-Mir-15-P2c  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Hsa-Mir-15-P2c  Laf-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mml-Mir-15-P2c  Mmr-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Neu-Mir-15-P2c-v1  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pab-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169856.1: 213867-213932 [-]
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CCAAGAGGGAAAGAUCUGUCCACUGUGCUGUAGCAGCACGUAAAUACUGGAGUAUAGGAUUGUCUGAAUGCCCUCCAGUAUUACUCUGCUGCUUUAGUAAGGUUGGACAUUGGCACACAUGCUACA
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Structure
        10         20         30         40        50        60  
CCAAGAGGGAAAGAUCU-    -   G     U       C-|   A        UAUAGGAUU 
                  GUCC ACU UGCUG AGCAGCA  GUAA UACUGGAG         G
                  CAGG UGG AUGAU UCGUCGU  CAUU AUGACCUC         U
ACAUCGUACACACGGUUA    U   A     U       CU^   -        CCGUAAGUC 
    120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Gja-Mir-15-P2c_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAAUACUGGAG -22
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Star sequence

Gja-Mir-15-P2c_3p* (predicted)
mirBase accessionNone
Sequence 
44- CCAGUAUUACUCUGCUGCUUUA -66
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