Mir-15-P2c

MirGeneDB ID

Bta-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-503

Paralogues

Bta-Mir-15-P1a Bta-Mir-15-P1b Bta-Mir-15-P1c Bta-Mir-15-P1d Bta-Mir-15-P2a Bta-Mir-15-P2b Bta-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Oan-Mir-15-P2c Ocu-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 18242411-18242473 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 NC_037357.1: 18236226-18236283 [-] UCSC Ensembl
Mir-450-P2 NC_037357.1: 18236396-18236452 [-] UCSC Ensembl
Mir-450-P1 NC_037357.1: 18236541-18236597 [-] UCSC Ensembl
Mir-542 NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Mir-15-P2c NC_037357.1: 18242411-18242473 [-] UCSC Ensembl
Mir-15-P1c NC_037357.1: 18242762-18242820 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGGUUGCCGUGCAGCACUCAGCCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGGGCAAUUGGUGAUCUGGAGUAUUGUUUCUGCUGCCCGGGCAAGACUGGGACUCCCGCACGGGCCCCCC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGGUUGCCGUGCAGCA--|    CCG     UA                 G   UGGGCAA 
                   CUCAG   UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUC   ACGGG  CGUCGUCUUUGUUAUGA GUC       U
CCCCCCGGGCACGCCCUCA^    AGA     CC                 G   UAGUGGU 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-15-P2c_5p

mirBase accession

MIMAT0025557

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-503-5p

Star sequence

Bta-Mir-15-P2c_3p*

mirBase accession

MIMAT0025558

Sequence

40- GGAGUAUUGUUUCUGCUGCCCGG -63

Get sequence

Proposed targets

TargetScanVert: bta-miR-503-3p