Mir-542

MirGeneDB ID

Bta-Mir-542

Family name

MIR-542 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-542

Paralogues

Orthologues

Cfa-Mir-542-v1 Cja-Mir-542 Cpo-Mir-542 Dno-Mir-542-v1 Eca-Mir-542-v1 Ete-Mir-542 Hsa-Mir-542-v1 Laf-Mir-542 Mml-Mir-542-v1 Mmr-Mir-542-v1 Mmu-Mir-542 Ocu-Mir-542-v1 Pab-Mir-542 Rno-Mir-542-P1a Rno-Mir-542-P1b Rno-Mir-542-P1c

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 18237457-18237515 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-542)

Mir-450-P3 NC_037357.1: 18236226-18236283 [-] UCSC Ensembl
Mir-450-P2 NC_037357.1: 18236396-18236452 [-] UCSC Ensembl
Mir-450-P1 NC_037357.1: 18236541-18236597 [-] UCSC Ensembl
Mir-542 NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Mir-15-P2c NC_037357.1: 18242411-18242473 [-] UCSC Ensembl
Mir-15-P1c NC_037357.1: 18242762-18242820 [-] UCSC Ensembl

Seed

GUGACAG

Precursor
(pre-Mir +30nt flank)

UGAGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCGCUCAUCUUCACAGCAAU

Get precursor sequence

Structure

        10        20          30        40        50         
UGAGUCAAGGAUGCACAGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UAACGACACUUCUACUCGCCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-542_5p*

mirBase accession

MIMAT0013594

Sequence

0- UCGGGGAUCAUCAUGUCACGAG -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-542-5p

Mature sequence

Bta-Mir-542_3p

mirBase accession

None

Sequence

37- UGUGACAGAUUGAUAACUGAAA -59

Get sequence