MirGeneDB 3.0
MirGeneDB ID

Hsa-Mir-542

Family name MIR-542 (all species)
Species Human (Homo sapiens)
MiRBase ID hsa-mir-542
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Eca-Mir-542-v1  Ete-Mir-542  Laf-Mir-542  Mml-Mir-542-v1  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)		 chrX: 134541364-134541422 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-450-P3 chrX: 134540195-134540252 [-] UCSC Ensembl
Mir-450-P2 chrX: 134540358-134540414 [-] UCSC Ensembl
Mir-450-P1 chrX: 134540529-134540585 [-] UCSC Ensembl
Mir-542-v1 chrX: 134541364-134541422 [-] UCSC Ensembl
Mir-542-v2 chrX: 134541365-134541421 [-] UCSC Ensembl
Mir-15-P2c chrX: 134546331-134546393 [-] UCSC Ensembl
Mir-15-P1c chrX: 134546643-134546701 [-] UCSC Ensembl
Variant

Hsa-Mir-542-v1
Seed GUGACAG
Precursor
(pre-Mir +30nt flank)		 
UCGGUCAAGGAUGCACAGAUCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCAGUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCAUAGCAAA
Get precursor sequence
Structure
        10          20        30        40        50         
UCGGUCAAGGAUGCACAGA--|       AUC    GG    UCA         AUACCA 
                     UCUCAGAC   UCGG  AUCA   UGUCACGAG      \
                     AGGGUCUG   AGUC  UAGU   ACAGUGUUC      G
AAACGAUACUUCUACUCACCG^       GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-542-v1_5p*
mirBase accessionMIMAT0003340
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
Get sequence
Proposed targets microrna.org: MIMAT0003340
TargetScanVert: hsa-miR-542-5p
TargetMiner: hsa-miR-542-5p
miRDB: MIMAT0003340
Mature sequence

Hsa-Mir-542-v1_3p
mirBase accessionMIMAT0003389
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence
Proposed targets microrna.org: MIMAT0003389
TargetScanVert: hsa-miR-542-3p
TargetMiner: hsa-miR-542-3p
miRDB: MIMAT0003389
Variant

Hsa-Mir-542-v2
Seed UGUGACA
Precursor
(pre-Mir +30nt flank)		 
CGGUCAAGGAUGCACAGAUCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCAGUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCAUAGCAA
Get precursor sequence
Structure
        10          20        30        40        50        
CGGUCAAGGAUGCACAGA--|       AUC    GG    UCA         AUACCA 
                    UCUCAGAC   UCGG  AUCA   UGUCACGAG      \
                    AGGGUCUG   AGUC  UAGU   ACAGUGUUC      G
AACGAUACUUCUACUCACCG^       GAA    AA    UAG         ACGUGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-542-v2_5p*
mirBase accessionMIMAT0003340
Sequence 
0- CGGGGAUCAUCAUGUCACGAGA -22
Get sequence
Proposed targets microrna.org: MIMAT0003340
TargetScanVert: hsa-miR-542-5p
TargetMiner: hsa-miR-542-5p
miRDB: MIMAT0003340
Mature sequence

Hsa-Mir-542-v2_3p
mirBase accessionMIMAT0003389
Sequence 
35- UUGUGACAGAUUGAUAACUGAA -57
Get sequence
Proposed targets microrna.org: MIMAT0003389
TargetScanVert: hsa-miR-542-3p
TargetMiner: hsa-miR-542-3p
miRDB: MIMAT0003389