MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-542

Family name MIR-542 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cpo-Mir-542  Dno-Mir-542-v1  Eca-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mml-Mir-542-v1  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 126003574-126003632 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542)		 Mir-450-P3 CM021937.1: 126002103-126002160 [-] UCSC Ensembl
Mir-450-P2 CM021937.1: 126002266-126002322 [-] UCSC Ensembl
Mir-450-P1 CM021937.1: 126002435-126002491 [-] UCSC Ensembl
Mir-542 CM021937.1: 126003574-126003632 [-] UCSC Ensembl
Mir-15-P2c CM021937.1: 126008473-126008535 [-] UCSC Ensembl
Mir-15-P1c CM021937.1: 126008803-126008861 [-] UCSC Ensembl
Seed CGGGGAU
Precursor
(pre-Mir +30nt flank)		 
UCGGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCGUGUCACGAGAUAUCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCGUCUUCAUAACAAA
Get precursor sequence
Structure
        10        20          30         40        50         
UCGGUCAAGGAUGCACAGAC--       AUC    GG   -|  G         AUAUCA 
                      CUCAGAC   UCGG  AUC AUC UGUCACGAG      \
                      GGGUCUG   AGUC  UAG UAG ACAGUGUUC      C
AAACAAUACUUCUGCUCACCGA       GAA    AA   U^  -         ACGUGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-542_5p
mirBase accessionNone
Sequence 
0- UCGGGGAUCAUCGUGUCACGAG -22
Get sequence
Star sequence

Cja-Mir-542_3p*
mirBase accessionNone
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence