Mir-450-P1

MirGeneDB ID

Bta-Mir-450-P1

Family name

MIR-450 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-450a-2

Paralogues

Bta-Mir-450-P2 Bta-Mir-450-P3

Orthologues

Cfa-Mir-450-P1 Cja-Mir-450-P1 Cpo-Mir-450-P1 Dno-Mir-450-P1 Eca-Mir-450-P1 Hsa-Mir-450-P1 Laf-Mir-450-P1 Mml-Mir-450-P1 Mmr-Mir-450-P1 Mmu-Mir-450-P1 Ocu-Mir-450-P1 Pab-Mir-450-P1 Rno-Mir-450-P1a Rno-Mir-450-P1b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 18236541-18236597 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-450-P1)

Mir-450-P3 NC_037357.1: 18236226-18236283 [-] UCSC Ensembl
Mir-450-P2 NC_037357.1: 18236396-18236452 [-] UCSC Ensembl
Mir-450-P1 NC_037357.1: 18236541-18236597 [-] UCSC Ensembl
Mir-542 NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Mir-15-P2c NC_037357.1: 18242411-18242473 [-] UCSC Ensembl
Mir-15-P1c NC_037357.1: 18242762-18242820 [-] UCSC Ensembl

Seed

UUUGCGA

Precursor
(pre-Mir +30nt flank)

AAAAGUGUUCAAAGAAAGAUGCUAAACUAUUUUUGCGAUGUGUUCCUAAUAUGUAAUCUAAAUGUAUUGGGAACAUUUUGCAUUCAUAGUUUUGUAUCAAUCUUCAUAUUAUUAUAU

Get precursor sequence

Structure

        10          20        30        40        50        
AAAAGUGUUCAAAGAAA--|    U       UUU     U             GUAAU 
                   GAUGC AAACUAU   UGCGA GUGUUCCUAAUAU     \
                   CUAUG UUUGAUA   ACGUU UACAAGGGUUAUG     C
UAUAUUAUUAUACUUCUAA^    U       CUU     U             UAAAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-450-P1_5p

mirBase accession

MIMAT0003834

Sequence

0- UUUUGCGAUGUGUUCCUAAUAU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-450a

Star sequence

Bta-Mir-450-P1_3p*

mirBase accession

None

Sequence

35- AUUGGGAACAUUUUGCAUUCAU -57

Get sequence