MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-450-P1a

Family name MIR-450 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-450b-1
Paralogues Rno-Mir-450-P1b  Rno-Mir-450-P2a  Rno-Mir-450-P2b  Rno-Mir-450-P3a  Rno-Mir-450-P3b 
Orthologues Bta-Mir-450-P1  Cfa-Mir-450-P1  Cja-Mir-450-P1  Cpo-Mir-450-P1  Dno-Mir-450-P1  Eca-Mir-450-P1  Hsa-Mir-450-P1  Laf-Mir-450-P1  Mml-Mir-450-P1  Mmr-Mir-450-P1  Mmu-Mir-450-P1  Ocu-Mir-450-P1  Pab-Mir-450-P1 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 158589644-158589700 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-450-P1a)		 Mir-15-P1c3 chrX: 158584564-158584621 [+] UCSC Ensembl
Mir-15-P2c3 chrX: 158584862-158584924 [+] UCSC Ensembl
Mir-351-P1a chrX: 158585602-158585661 [+] UCSC Ensembl
Mir-542-P1a chrX: 158588539-158588599 [+] UCSC Ensembl
Mir-450-P1a chrX: 158589644-158589700 [+] UCSC Ensembl
Mir-450-P2a chrX: 158589777-158589833 [+] UCSC Ensembl
Mir-450-P3a chrX: 158589938-158589994 [+] UCSC Ensembl
Seed UUUGCGA
Precursor
(pre-Mir +30nt flank)		 
GGAGAAAGGCAAAGCCAGAUGCUGAACUAUUUUUGCGAUGUGUUCCUAAUAUGUACUAUGAGUGUAUUGGGGACGCUUCGCAUUCAUGGUUCUGCAUCAGUCAUAUGGAGUGAAGAC
Get precursor sequence
Structure
        10          20        30        40        50        
GGAGAAAGGCAAAGCCA--|    U       UUU     U            UGUACU 
                   GAUGC GAACUAU   UGCGA GUGUUCCUAAUA      \
                   CUACG CUUGGUA   ACGCU CGCAGGGGUUAU      A
CAGAAGUGAGGUAUACUGA^    U       CUU     U            GUGAGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-450-P1a_5p
mirBase accessionMIMAT0035746
Sequence 
0- UUUUGCGAUGUGUUCCUAAUA -21
Get sequence
Star sequence

Rno-Mir-450-P1a_3p*
mirBase accessionMIMAT0035747
Sequence 
35- AUUGGGGACGCUUCGCAUUCAU -57
Get sequence