Mir-15-P2c4

MirGeneDB ID

Rno-Mir-15-P2c4

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-503-2

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P1d Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Oan-Mir-15-P2c Ocu-Mir-15-P2c Pbv-Mir-15-P2c Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xtr-Mir-15-P2c

Node of Origin (locus)

R. norvegicus

Node of Origin (family)

Olfactores

Genome context
(rn6)

chrX: 158148481-158148543 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c4)

Mir-15-P1c4 chrX: 158148183-158148240 [+] UCSC Ensembl
Mir-15-P2c4 chrX: 158148481-158148543 [+] UCSC Ensembl
Mir-542-P1c chrX: 158152156-158152216 [+] UCSC Ensembl
Mir-450-P2b chrX: 158153394-158153450 [+] UCSC Ensembl
Mir-542-P1b chrX: 158158895-158158955 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAACUCAGCCCACCACACCCAGUCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGAGUGUUUGGUGCCCUGGAGUAUUGUUUCCGCUGCCUGGGUAAGUCUGGGACUUCCACAUGGGCACACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GAACUCAGCCCACCACA--|    UCG     UA                 G   UGAGUGU 
                   CCCAG   UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUC   AUGGG  CGUCGCCUUUGUUAUGA GUC       U
CCACACGGGUACACCUUCA^    UGA     UC                 G   CCGUGGU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-15-P2c4_5p

mirBase accession

MIMAT0003213

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

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Star sequence

Rno-Mir-15-P2c4_3p*

mirBase accession

MIMAT0017224

Sequence

40- GGAGUAUUGUUUCCGCUGCCUGG -63

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