Mir-15-P2c4

MirGeneDB ID

Rno-Mir-15-P2c4

Family name

MIR-15 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-503-2

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P1d Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Sha-Mir-15-P2c-v1 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xtr-Mir-15-P2c

Node of Origin (locus)

R. norvegicus

Node of Origin (family)

Olfactores

Genome context
(rn6)

chrX: 158148481-158148543 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c4)

Mir-15-P1c4 chrX: 158148183-158148240 [+] UCSC Ensembl
Mir-15-P2c4 chrX: 158148481-158148543 [+] UCSC Ensembl
Mir-351-P1b chrX: 158149221-158149280 [+] UCSC Ensembl
Mir-542-P1c chrX: 158152156-158152216 [+] UCSC Ensembl
Mir-450-P1b chrX: 158153261-158153317 [+] UCSC Ensembl
Mir-450-P2b chrX: 158153394-158153450 [+] UCSC Ensembl
Mir-450-P3b chrX: 158153555-158153611 [+] UCSC Ensembl
Mir-542-P1b chrX: 158158895-158158955 [+] UCSC Ensembl

Seed

AGCAGCG

Precursor
(pre-Mir +30nt flank)

GAACUCAGCCCACCACACCCAGUCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGAGUGUUUGGUGCCCUGGAGUAUUGUUUCCGCUGCCUGGGUAAGUCUGGGACUUCCACAUGGGCACACC

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Structure

        10          20        30        40        50        60 
GAACUCAGCCCACCACA--|    UCG     UA                 G   UGAGUGU 
                   CCCAG   UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUC   AUGGG  CGUCGCCUUUGUUAUGA GUC       U
CCACACGGGUACACCUUCA^    UGA     UC                 G   CCGUGGU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-15-P2c4_5p

mirBase accession

MIMAT0003213

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

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Star sequence

Rno-Mir-15-P2c4_3p*

mirBase accession

MIMAT0017224

Sequence

40- GGAGUAUUGUUUCCGCUGCCUGG -63

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