Mir-15-P2d

MirGeneDB ID

Rno-Mir-15-P2d

Family name

MIR-15 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-195

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P1d Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cja-Mir-15-P2d Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Eca-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Pab-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

chr10: 56845315-56845375 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P1d chr10: 56844978-56845039 [+] UCSC Ensembl
Mir-15-P2d chr10: 56845315-56845375 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UUUGUUGCCCACACCCAACUCUCCUGGCUCUAGCAGCACAGAAAUAUUGGCACGGGUAAGUGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAGAGCUACUGAAGGGGCU

Get precursor sequence

Structure

        10          20        30        40         50         
UUUGUUGCCCACACCCA--   CU    G  CU          A-|         CGGGUA 
                   ACU  CCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UGG  GGAC GA  UCGUCGUGUC  UUAUAACCGU      G
UCGGGGAAGUCAUCGAGAG   UG    G  CC          GG^         CUGAGU 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-15-P2d_5p

mirBase accession

MIMAT0000870

Sequence

0- UAGCAGCACAGAAAUAUUGGCA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000870
TargetScanVert: rno-miR-195-5p
miRDB: MIMAT0000870

Star sequence

Rno-Mir-15-P2d_3p*

mirBase accession

MIMAT0017149

Sequence

38- CCAAUAUUGGCUGUGCUGCUCCA -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-195-3p
miRDB: MIMAT0017149