Mir-15-P2d

MirGeneDB ID

Rno-Mir-15-P2d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-195

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P1d Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

chr10: 56845315-56845375 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P1d chr10: 56844978-56845039 [+] UCSC Ensembl
Mir-15-P2d chr10: 56845315-56845375 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGUUGCCCACACCCAACUCUCCUGGCUCUAGCAGCACAGAAAUAUUGGCACGGGUAAGUGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAGAGCUACUGAAGGGGCU

Get precursor sequence

Structure

        10          20        30        40         50         
UUUGUUGCCCACACCCA--   CU    G  CU          A-|         CGGGUA 
                   ACU  CCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UGG  GGAC GA  UCGUCGUGUC  UUAUAACCGU      G
UCGGGGAAGUCAUCGAGAG   UG    G  CC          GG^         CUGAGU 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-15-P2d_5p

mirBase accession

MIMAT0000870

Sequence

0- UAGCAGCACAGAAAUAUUGGCA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000870
TargetScanVert: rno-miR-195-5p
miRDB: MIMAT0000870

Star sequence

Rno-Mir-15-P2d_3p*

mirBase accession

MIMAT0017149

Sequence

38- CCAAUAUUGGCUGUGCUGCUCCA -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-195-3p
miRDB: MIMAT0017149