Mir-15-P1c4

MirGeneDB ID

Rno-Mir-15-P1c4

Family name

MIR-15 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-322-2

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1d Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Rno-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xtr-Mir-15-P1c

Node of Origin (locus)

R. norvegicus

Node of Origin (family)

Olfactores

Genome context
(rn6)

chrX: 158148183-158148240 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c4)

Mir-15-P1c4 chrX: 158148183-158148240 [+] UCSC Ensembl
Mir-15-P2c4 chrX: 158148481-158148543 [+] UCSC Ensembl
Mir-351-P1b chrX: 158149221-158149280 [+] UCSC Ensembl
Mir-542-P1c chrX: 158152156-158152216 [+] UCSC Ensembl
Mir-450-P1b chrX: 158153261-158153317 [+] UCSC Ensembl
Mir-450-P2b chrX: 158153394-158153450 [+] UCSC Ensembl
Mir-450-P3b chrX: 158153555-158153611 [+] UCSC Ensembl
Mir-542-P1b chrX: 158158895-158158955 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GCCCCCACCCUCGCUGACUCCGAAGGGAUGCAGCAGCAAUUCAUGUUUUGGAGUAUUGCCAAGGUUCAAAACAUGAAGCGCUGCAACACCCCUUCGUGGGAAAUAGAGAGGUGGGGUC

Get precursor sequence

Structure

        10         20         30        40        50        
GCCCCCACCCUCGCUGA-   -|      A  CA     AA             GUAUU 
                  CUC CGAAGGG UG  GCAGC  UUCAUGUUUUGGA     G
                  GGG GCUUCCC AC  CGUCG  AAGUACAAAACUU     C
CUGGGGUGGAGAGAUAAA   U^      C  AA     CG             GGAAC 
      110       100        90        80        70        60