Mir-15-P1c

MirGeneDB ID

Aca-Mir-15-P1c

Family name

MIR-15 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-15b

Paralogues

Aca-Mir-15-P1b Aca-Mir-15-P2b Aca-Mir-15-P2c Aca-Mir-15-P2d

Orthologues

Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(anoCar2)

GL343761.1: 167260-167318 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-15-P1c GL343761.1: 167260-167318 [+] UCSC Ensembl
Mir-15-P2c GL343761.1: 168393-168458 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UUGGAUUGUCCUUUGGGCCCGGAGGUGAUGUAGCAGCACAACAUGGUUUGUAGGGACACAGAAGAUACAGACCGUUCUGGGCUGCCUCAUUACCUUUUGGGAUUAAGACACGAAAAGGG

Get precursor sequence

Structure

        10         20         30        40        50         
UUGGAUUGUCCUUUGGG-   -|         UA     A  AC          GGGACA 
                  CCC GGAGGUGAUG  GCAGC CA  AUGGUUUGUA      \
                  GGG UUUCCAUUAC  CGUCG GU  UGCCAGACAU      C
GGGAAAAGCACAGAAUUA   U^         UC     G  CU          AGAAGA 
       110       100        90        80        70        60