Mir-15-P1c

MirGeneDB ID

Xtr-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-15c

Paralogues

Xtr-Mir-15-P1a Xtr-Mir-15-P1b Xtr-Mir-15-P2a Xtr-Mir-15-P2b Xtr-Mir-15-P2c

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(xenTro9_add)

chr8: 47368668-47368725 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-15-P2c chr8: 47366675-47366740 [-] UCSC Ensembl
Mir-15-P1c chr8: 47368668-47368725 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACUACAUUUUAGAUGCUUUGAGGUGAUCUAGCAGCACAUCAUGGUUUGUAGAAACAAGGAGAUACAGACCAUUCUGAGCUGCCUCUUGACCUCAGAGAAAAGCCAAAGAACCCUUG

Get precursor sequence

Structure

        10          20        30        40        50        
CUACUACAUUUUAGAUG--|        GAUCUA     A  UC          GAAAC 
                   CUUUGAGGU      GCAGC CA  AUGGUUUGUA     A
                   GAGACUCCA      CGUCG GU  UACCAGACAU     A
GUUCCCAAGAAACCGAAAA^        GUUCUC     A  CU          AGAGG 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-15-P1c_5p

mirBase accession

MIMAT0003651

Sequence

0- UAGCAGCACAUCAUGGUUUGUA -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-15c

Star sequence

Xtr-Mir-15-P1c_3p*

mirBase accession

None

Sequence

36- CAGACCAUUCUGAGCUGCCUCU -58

Get sequence