MirGeneDB 3.0
MirGeneDB ID

Mun-Mir-15-P1c

Family name MIR-15 (all species)
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-15-P1a  Mun-Mir-15-P1b  Mun-Mir-15-P2a  Mun-Mir-15-P2b  Mun-Mir-15-P2c 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_901765095.2_aMicUni1.2)		 LR594638.1: 44462746-44462803 [+]
Clustered miRNAs
(< 50kb from Mir-15-P1c)		 Mir-15-P1c LR594638.1: 44462746-44462803 [+]
Mir-15-P2c LR594638.1: 44463209-44463276 [+]
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UGAUUUCAGCAGGUGAGCUUUGGGGAGAUGUAGCAGCACAUCAUGGUUUGUUGUGACAAGGAGAUACAGACCAUUCUGAGCUGCCUCAUUUCCUCAAGGAAAAGGCAAGAGAAUAAGC
Get precursor sequence
Structure
        10          20        30        40        50        
UGAUUUCAGCAGGUGAG--|            UA     A  UC         UGUGAC 
                   CUUUGGGGAGAUG  GCAGC CA  AUGGUUUGU      A
                   GGAACUCCUUUAC  CGUCG GU  UACCAGACA      A
CGAAUAAGAGAACGGAAAA^            UC     A  CU         UAGAGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Mun-Mir-15-P1c_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGUU -22
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Star sequence

Mun-Mir-15-P1c_3p*
mirBase accessionNone
Sequence 
36- CAGACCAUUCUGAGCUGCCUCA -58
Get sequence