Mir-15-P1c

MirGeneDB ID

Mml-Mir-15-P1c

Family name

MIR-15 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-424

Paralogues

Mml-Mir-15-P1a Mml-Mir-15-P1b Mml-Mir-15-P1d Mml-Mir-15-P2a Mml-Mir-15-P2b Mml-Mir-15-P2c Mml-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 130810557-130810615 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-450-P3 CM014356.1: 130804102-130804159 [-] UCSC Ensembl
Mir-450-P2 CM014356.1: 130804265-130804321 [-] UCSC Ensembl
Mir-450-P1 CM014356.1: 130804436-130804492 [-] UCSC Ensembl
Mir-542-v1 CM014356.1: 130805265-130805323 [-] UCSC Ensembl
Mir-542-v2 CM014356.1: 130805266-130805322 [-] UCSC Ensembl
Mir-15-P2c CM014356.1: 130810224-130810286 [-] UCSC Ensembl
Mir-15-P1c CM014356.1: 130810557-130810615 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

CUGUCCCCCUUCAUUGACUCCGAGGGGAUACAGCAGCAAUUCAUGUUUUGAAGUGUUCUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGUGGGGAAGGUAGAAGGUGGGGU

Get precursor sequence

Structure

        10         20         30        40        50         
CUGUCCCCCUUCAUUGA-   -|      A  C      AA             GUGUUC 
                  CUC CGAGGGG UA AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UGGGGUGGAAGAUGGAAG   U^      C  A      CG             GGUAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-15-P1c_5p

mirBase accession

MIMAT0006323

Sequence

0- CAGCAGCAAUUCAUGUUUUGAA -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-424-5p

Star sequence

Mml-Mir-15-P1c_3p*

mirBase accession

MIMAT0026872

Sequence

37- CAAAACGUGAGGCGCUGCUAUA -59

Get sequence

Proposed targets

TargetScanVert: mml-miR-424-3p