MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCG
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-503
Paralogues Mml-Mir-15-P1a  Mml-Mir-15-P1b  Mml-Mir-15-P1c  Mml-Mir-15-P1d  Mml-Mir-15-P2a  Mml-Mir-15-P2b  Mml-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(rheMac8_trace)
chrX: 128518112-128518174 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-450-P3 chrX: 128511991-128512048 [-] UCSC Ensembl
Mir-450-P2 chrX: 128512154-128512210 [-] UCSC Ensembl
Mir-450-P1 chrX: 128512325-128512381 [-] UCSC Ensembl
Mir-542-v1 chrX: 128513154-128513212 [-] UCSC Ensembl
Mir-542-v2 chrX: 128513155-128513211 [-] UCSC Ensembl
Mir-15-P2c chrX: 128518112-128518174 [-] UCSC Ensembl
Mir-15-P1c chrX: 128518445-128518503 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGACGCGGUGCCCGCGCUCAGCCGUGCCCUAGCAGCGGGAACAGUUCUGCAGUGAGUGAUCAGUACUCUGGAGUAUUGUUUCCGCUGCCAGGGUAAGUCUGGGACUGCCGUUCGGGCCUACC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGGACGCGGUGCCCGCG--|    CCG      A              U  G   UGAGUGA 
                   CUCAG   UGCCCU GCAGCGGGAACAGU CU CAG       \
                   GGGUC   AUGGGA CGUCGCCUUUGUUA GA GUC       U
CCAUCCGGGCUUGCCGUCA^    UGA      C              U  G   UCAUGAC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-15-P2c_5p

mirBase accessionMIMAT0006367
Sequence
0- UAGCAGCGGGAACAGUUCUGCAG -23
Get sequence
Proposed targets TargetScanVert: mml-miR-503-5p
Star sequence

Mml-Mir-15-P2c_3p*

mirBase accessionMIMAT0026890
Sequence
40- GGAGUAUUGUUUCCGCUGCCAGG -63
Get sequence
Proposed targets TargetScanVert: mml-miR-503-3p