Mir-15-P2c

MirGeneDB ID

Cli-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-16b

Paralogues

Cli-Mir-15-P1a Cli-Mir-15-P1b Cli-Mir-15-P1c Cli-Mir-15-P2a Cli-Mir-15-P2b

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Oan-Mir-15-P2c Ocu-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(colLiv2)

scaffold72: 3554294-3554358 [-]

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-15-P2c scaffold72: 3554294-3554358 [-]
Mir-15-P1c scaffold72: 3554771-3554828 [-]

Precursor
(pre-Mir +30nt flank)

CACUGGGAUGCAGAGCUGUCAGCAGUGCUCUAGCAGCACGUAAAUACUGGAGUUUAGGAUUGCCUGUUGCUCUCCAGUAUUGCAUUGCUGCUUUAGUGAGGCUGGAAAUCGGUCCCUGCCGCAGG

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Structure

        10          20        30        40        50        60  
CACUGGGAUGCAGAGCUG--|    AG    CU       CGUA          UUUAGGAUU 
                    UCAGC  UGCU  AGCAGCA    AAUACUGGAG         \
                    GGUCG  GUGA  UCGUCGU    UUAUGACCUC         G
GGACGCCGUCCCUGGCUAAA^    GA    UU       UACG          UCGUUGUCC 
   120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Cl	Cl	Cl	Cl	Cl	To

Mature sequence

Cli-Mir-15-P2c_5p

mirBase accession

MIMAT0038419

Sequence

0- UAGCAGCACGUAAAUACUGGAG -22

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Star sequence

Cli-Mir-15-P2c_3p*

mirBase accession

MIMAT0038420

Sequence

43- CCAGUAUUGCAUUGCUGCUUUA -65

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