Mir-15-P2c

MirGeneDB ID

Mmu-Mir-15-P2c

Family name

MIR-15 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-503

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chrX: 53053987-53054049 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl

Seed

AGCAGCG

Precursor
(pre-Mir +30nt flank)

GUACUCAGCCCAUCCCACUCAGUCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGAGUGUUUGGUGCCCUGGAGUAUUGUUUCCACUGCCUGGGUAAGUCUGGGUCUUCCACAUGGGCACACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GUACUCAGCCCAUCCCA--|    UCG     UA    C            G   UGAGUGU 
                   CUCAG   UGCCC  GCAG GGGAACAGUACU CAG       \
                   GGGUC   AUGGG  CGUC CCUUUGUUAUGA GUC       U
CCACACGGGUACACCUUCU^    UGA     UC    A            G   CCGUGGU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-15-P2c_5p

mirBase accession

MIMAT0003188

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0003188
TargetScanVert: mmu-miR-503-5p
miRDB: MIMAT0003188

Star sequence

Mmu-Mir-15-P2c_3p*

mirBase accession

MIMAT0004790

Sequence

40- GGAGUAUUGUUUCCACUGCCUGG -63

Get sequence

Proposed targets

microrna.org: MIMAT0004790
TargetScanVert: mmu-miR-503-3p
miRDB: MIMAT0004790