MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-503
Paralogues Mmu-Mir-15-P1a  Mmu-Mir-15-P1b  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mmu-Mir-15-P1d  Mmu-Mir-15-P2a  Mmu-Mir-15-P2b  Mmu-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(mm10)
chrX: 53053987-53054049 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUACUCAGCCCAUCCCACUCAGUCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGAGUGUUUGGUGCCCUGGAGUAUUGUUUCCACUGCCUGGGUAAGUCUGGGUCUUCCACAUGGGCACACC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GUACUCAGCCCAUCCCA--|    UCG     UA    C            G   UGAGUGU 
                   CUCAG   UGCCC  GCAG GGGAACAGUACU CAG       \
                   GGGUC   AUGGG  CGUC CCUUUGUUAUGA GUC       U
CCACACGGGUACACCUUCU^    UGA     UC    A            G   CCGUGGU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-15-P2c_5p

mirBase accessionMIMAT0003188
Sequence
0- UAGCAGCGGGAACAGUACUGCAG -23
Get sequence
Proposed targets microrna.org: MIMAT0003188
TargetScanVert: mmu-miR-503-5p
miRDB: MIMAT0003188
Star sequence

Mmu-Mir-15-P2c_3p*

mirBase accessionMIMAT0004790
Sequence
40- GGAGUAUUGUUUCCACUGCCUGG -63
Get sequence
Proposed targets microrna.org: MIMAT0004790
TargetScanVert: mmu-miR-503-3p
miRDB: MIMAT0004790