MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-15-P2d

Family name MIR-15 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-195
Paralogues Cpo-Mir-15-P1a  Cpo-Mir-15-P1b  Cpo-Mir-15-P1c  Cpo-Mir-15-P1d  Cpo-Mir-15-P2a  Cpo-Mir-15-P2b  Cpo-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(cavPor3)		 scaffold_61: 9617085-9617145 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P2d)		 Mir-15-P1d scaffold_61: 9616778-9616839 [+] UCSC
Mir-15-P2d scaffold_61: 9617085-9617145 [+] UCSC
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UUUGUUGCCCACACCCAGCUCCCCUGGCUUUAGCAGCACAGAAAUAUUGGCACUGGGAAGCAAGUCUGCCAAUAUUGGUUGUGCUGCUCCAGGCAGGGUGGUGAGAGCCACCCAGGAGGGG
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Structure
        10          20        30        40         50         
UUUGUUGCCCACACCCA--  UC     G  UU          A-|         CUGGGA 
                   GC  CCCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UG  GGGAC GA  UCGUCGUGUU  UUAUAACCGU      G
GGGGAGGACCCACCGAGAG  GU     G  CC          GG^         CUGAAC 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-15-P2d_5p
mirBase accessionMIMAT0047076
Sequence 
0- UAGCAGCACAGAAAUAUUGGCA -22
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Star sequence

Cpo-Mir-15-P2d_3p*
mirBase accessionMIMAT0047077
Sequence 
38- CCAAUAUUGGUUGUGCUGCUCCA -61
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