MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-15-P1d

Family name MIR-15 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-497
Paralogues Cpo-Mir-15-P1a  Cpo-Mir-15-P1b  Cpo-Mir-15-P1c  Cpo-Mir-15-P2a  Cpo-Mir-15-P2b  Cpo-Mir-15-P2c  Cpo-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(cavPor3)		 scaffold_61: 9616778-9616839 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P1d scaffold_61: 9616778-9616839 [+] UCSC
Mir-15-P2d scaffold_61: 9617085-9617145 [+] UCSC
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UCUUAGCCCACCCUAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCGGAGGCCC
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Structure
        10          20        30        40        50        60
UCUUAGCCCACCCUAGU--| UG   C   CCC    G    C         UACGGCACU 
                   CC  CUC CGC   AGCA CACA UGUGGUUUG         G
                   GG  GGG GCG   UUGU GUGU ACACCAAAC         U
CCCGGAGGCGCCACGGAGG^ GU   A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a one nucleotide polymorphism in the 3p arm in the assembled sequence relative to the read data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-15-P1d_5p
mirBase accessionMIMAT0047295
Sequence 
0- CAGCAGCACACUGUGGUUUGUA -22
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Star sequence

Cpo-Mir-15-P1d_3p*
mirBase accessionMIMAT0047296
Sequence 
40- CAAACCACACUGUGGUGUUAGA -62
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