MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-15-P1d

Family name MIR-15 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-497
Paralogues Ami-Mir-15-P1a  Ami-Mir-15-P1b  Ami-Mir-15-P1c  Ami-Mir-15-P2a  Ami-Mir-15-P2b  Ami-Mir-15-P2c  Ami-Mir-15-P2d 
Orthologues Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712037.1: 56271-56327 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P2d NW_017712037.1: 56133-56188 [-] UCSC
Mir-15-P1d NW_017712037.1: 56271-56327 [-] UCSC
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CCGCAUGUGGAUGCAGGCCCAGCCCCGCCCCAGCAGCACAUCAUGGUUUGUGGGGUCUCGUGGCACAGACCAUGGCGUGGUGCUACCGCGGGGCCGGGGAGACAGCGUGGGAGACAG
Get precursor sequence
Structure
        10          20        30        40        50        
CCGCAUGUGGAUGCAGG--|  A       CCC    G   AU           GGGUC 
                   CCC GCCCCGC   AGCA CAC  CAUGGUUUGUG     \
                   GGG CGGGGCG   UCGU GUG  GUACCAGACAC     U
GACAGAGGGUGCGACAGAG^  C       CCA    G   CG           GGUGC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-15-P1d_5p
mirBase accessionMIMAT0038299
Sequence 
0- CAGCAGCACAUCAUGGUUUGUG -22
Get sequence
Star sequence

Ami-Mir-15-P1d_3p*
mirBase accessionMIMAT0038300
Sequence 
35- CAGACCAUGGCGUGGUGCUACC -57
Get sequence