MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-15-P1d

Family name MIR-15 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-497
Paralogues Sha-Mir-15-P1a  Sha-Mir-15-P1b  Sha-Mir-15-P1c  Sha-Mir-15-P2a  Sha-Mir-15-P2b  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(DEVIL_add)		 GL858641.1: 5142-5203 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P1d GL858641.1: 5142-5203 [+] UCSC Ensembl
Mir-15-P2d GL858641.1: 5479-5540 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CUACUCCCAAAUCCCAUCCUGCCUCCGCCCCAGCAGCACACUGUGGUUUGUUCAGUGUUGUGGCCAAGUCCAAACCACACUGUGGUGUUAGAGUGAGGGUAAGGAAGGCAUCACUGCCACCA
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Structure
        10          20        30        40        50        60
CUACUCCCAAAUCCCAU-  -|   UC   CCC    G    C         UUCAGUGUU 
                  CC UGCC  CGC   AGCA CACA UGUGGUUUG         G
                  GG AUGG  GUG   UUGU GUGU ACACCAAAC         U
ACCACCGUCACUACGGAA  A^   GA   AGA    G    C         CUGAACCGG 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-15-P1d_5p
mirBase accessionMIMAT0022821
Sequence 
0- CAGCAGCACACUGUGGUUUGUU -22
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Star sequence

Sha-Mir-15-P1d_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAAACCACACUGUGGUGUUAGA -62
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