Mir-15-P2b

MirGeneDB ID

Cpo-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-16b

Paralogues

Cpo-Mir-15-P1a Cpo-Mir-15-P1b Cpo-Mir-15-P1c Cpo-Mir-15-P1d Cpo-Mir-15-P2a Cpo-Mir-15-P2c Cpo-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(cavPor3)

scaffold_8: 57379204-57379268 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P1b scaffold_8: 57379064-57379123 [+] UCSC
Mir-15-P2b scaffold_8: 57379204-57379268 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UUUGGAUGGACUGACAUACUUGUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGACAGGAAUAUAGCAACUAUUUAUCA

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Structure

        10          20        30        40        50        60  
UUUGGAUGGACUGACAUA--|    UC    CU         UA        C  AGUGAAAU 
                    CUUGU  CACU  AGCAGCACG  AAUAUUGG GU        \
                    GGACA  GUGA  UCGUCGUGU  UUAUAACC CA        A
ACUAUUUAUCAACGAUAUAA^    GU    UU         UA        A  AAUUAUAA 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cpo-Mir-15-P2b_5p

mirBase accession

MIMAT0046855

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

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Star sequence

Cpo-Mir-15-P2b_3p*

mirBase accession

MIMAT0046856

Sequence

42- ACCAAUAUUAUUGUGCUGCUUUA -65

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