MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-15-P2d

Family name MIR-15 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-15-P1a  Laf-Mir-15-P1b  Laf-Mir-15-P1c  Laf-Mir-15-P1d  Laf-Mir-15-P2a  Laf-Mir-15-P2b  Laf-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010074.1: 10975158-10975218 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2d)		 Mir-15-P2d GL010074.1: 10975158-10975218 [-] UCSC Ensembl
Mir-15-P1d GL010074.1: 10975474-10975535 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UUUGUUGCCCACACCCAGCUCCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACCGGGAGAAGAGUCUACCAAUAUUGGCUGUGCUGCUGCAGGCAGGGUGGCAAGCGCUACCCAGGAGGGG
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Structure
        10          20        30        40         50         
UUUGUUGCCCACACCCA--  UC     G  C           A-|       CACCGGGA 
                   GC  CCCUG CU UAGCAGCACAG  AAUAUUGG        G
                   CG  GGGAC GA GUCGUCGUGUC  UUAUAACC        A
GGGGAGGACCCAUCGCGAA  GU     G  C           GG^       AUCUGAGA 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Wh
Mature sequence

Laf-Mir-15-P2d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAGAAAUAUUGGCA -22
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Star sequence

Laf-Mir-15-P2d_3p*
mirBase accessionNone
Sequence 
38- CCAAUAUUGGCUGUGCUGCUGCA -61
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