MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-15-P1c-v2

Family name MIR-15 (all species)
Seed AACCAUC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-15c
Paralogues Mdo-Mir-15-P1a  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1d  Mdo-Mir-15-P2a  Mdo-Mir-15-P2b  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mdo-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mml-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(monDom5_add)
X: 35734461-35734518 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c-v2)
Mir-15-P2c-v2 X: 35734296-35734358 [-] UCSC Ensembl
Mir-15-P2c-v1 X: 35734297-35734357 [-] UCSC Ensembl
Mir-15-P1c-v1 X: 35734461-35734518 [-] UCSC Ensembl
Mir-15-P1c-v2 X: 35734461-35734518 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCCUUCGCCGGACUCCUUUAGGAGAAAUAGCAGCACGCCAUGGUUUGUAGAGAUACGGUGAUACAAACCAUCGUGGGCUGUUACAUUUUCCUAAAGGGCACGCCGCCUAAAGUUG
Get precursor sequence
Structure
        10         20        30         40        50        
CCCCCCUUCGCCGGACU-            A-|      A   C         AGAGAU 
                  CCUUUAGGAGAA  UAGCAGC CGC AUGGUUUGU      A
                  GGAAAUCCUUUU  AUUGUCG GUG UACCAAACA      C
GUUGAAAUCCGCCGCACG            AC^      G   C         UAGUGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-15-P1c-v2_5p*

mirBase accessionMIMAT0028768
Sequence
0- UAGCAGCACGCCAUGGUUUGU -21
Get sequence
Proposed targets TargetScanVert: mdo-miR-15c-5p
Mature sequence

Mdo-Mir-15-P1c-v2_3p

mirBase accessionMIMAT0028769
Sequence
37- AAACCAUCGUGGGCUGUUACA -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-15c-3p