Mir-15-P1b

MirGeneDB ID

Dre-Mir-15-P1b

Family name

MIR-15 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-15c

Paralogues

Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Dre-Mir-15-P1d Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1 Dre-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr15: 1543699-1543757 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P1b chr15: 1543699-1543757 [+] UCSC Ensembl
Mir-15-P2b chr15: 1543869-1543933 [+] UCSC Ensembl

Seed

AGCAGCG

Precursor
(pre-Mir +30nt flank)

AUGGUGGAUGAAAUCAACCUUAGACCGCUAAAGCAGCGCGUCAUGGUUUUCAACAUUAGAGAAGGUGCAAGCCAUCAUUUGCUGCUCUAGAGUUUUAAGGCAUUCUCCUACACUAAACC

Get precursor sequence

Structure

        10          20        30        40        50         
AUGGUGGAUGAAAUCAA--|      CCG   A       C  C       U  ACAUUA 
                   CCUUAGA   CUA AGCAGCG GU AUGGUUU CA      \
                   GGAAUUU   GAU UCGUCGU UA UACCGAA GU      G
CCAAAUCACAUCCUCUUAC^      UGA   C       U  C       C  GGAAGA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P1b_5p

mirBase accession

MIMAT0003764

Sequence

0- AAGCAGCGCGUCAUGGUUUUCA -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-15c

Star sequence

Dre-Mir-15-P1b_3p*

mirBase accession

None

Sequence

37- CAAGCCAUCAUUUGCUGCUCUA -59

Get sequence