MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-15-P1b

Family name MIR-15 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-15b
Paralogues Cfa-Mir-15-P1a  Cfa-Mir-15-P1c  Cfa-Mir-15-P1d  Cfa-Mir-15-P2a  Cfa-Mir-15-P2b  Cfa-Mir-15-P2c  Cfa-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cin-Mir-15-P1  Cja-Mir-15-P1b  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(canFam3_add)		 chr34: 26460663-26460722 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1b)		 Mir-15-P1b chr34: 26460663-26460722 [+] UCSC Ensembl
Mir-15-P2b chr34: 26460807-26460871 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UCCUGUGUUUUAUGAGGCCUUAAAGUACUGUAGCAGCACAUCAUGGUUUACAUACUACAGUCAAGAUGCGAAUCAUUAUUUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAAACUGCU
Get precursor sequence
Structure
        10          20        30        40        50         
UCCUGUGUUUUAUGAGG--|      GUA   U       C  C      UA  UACUAC 
                   CCUUAAA   CUG AGCAGCA AU AUGGUU  CA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAA  GU      G
UCGUCAAAACUUACUUAAA^      AAA   C       U  U      GC  AGAACU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-15-P1b_5p
mirBase accessionMIMAT0006676
Sequence 
0- UAGCAGCACAUCAUGGUUUACA -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-15b
miRDB: MIMAT0006676
Star sequence

Cfa-Mir-15-P1b_3p*
mirBase accessionNone
Sequence 
38- CGAAUCAUUAUUUGCUGCUCUA -60
Get sequence