MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-3613

Family name MIR-3613 (all species)
Seed GUUGUAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-3613
Paralogues
Orthologues Bta-Mir-3613  Cfa-Mir-3613  Dno-Mir-3613  Ete-Mir-3613  Hsa-Mir-3613  Mdo-Mir-3613  Mml-Mir-3613  Ocu-Mir-3613  Sha-Mir-3613 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(cavPor3)		 scaffold_6: 59835890-59835947 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-3613)		 Mir-3613 scaffold_6: 59835890-59835947 [-] UCSC
Mir-15-P2a scaffold_6: 59875390-59875454 [-] UCSC
Mir-15-P1a scaffold_6: 59875535-59875593 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CGACGCGCCCGGAGAUGGCUGGGUUUGGAUUGUUGUACUUUUUUUUUUGUUCGUUGCAUUUUAAGGAACAAAAAAAAAGGCCAACCCUUCACACCAUUCAUUUGCACCUCAGGAGCGA
Get precursor sequence
Structure
        10        20          30        40        50         
CGACGCGCCCGGAGAUGGCUG--|  U    UU    UA               GUUGCA 
                       GGU UGGA  GUUG  CUUUUUUUUUUGUUC      \
                       CCA ACUU  CAAC  GGAAAAAAAAACAAG      U
AGCGAGGACUCCACGUUUACUUA^  C    CC    C-               GAAUUU 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-3613_5p
mirBase accessionMIMAT0047439
Sequence 
0- UGUUGUACUUUUUUUUUUGUUC -22
Get sequence
Star sequence

Cpo-Mir-3613_3p*
mirBase accessionMIMAT0047440
Sequence 
37- ACAAAAAAAAAGGCCAACCCU -58
Get sequence