MirGeneDB ID | Cli-Mir-460-P2 |
Family name |
MIR-460 (all species) |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
|
Paralogues |
Cli-Mir-460-P1
|
Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
Xtr-Mir-460-P2
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (colLiv2) |
scaffold72: 1902296-1902352 [+]
|
Seed |
CCUCAUU |
Precursor (pre-Mir +30nt flank) |
UUGUGACCUCUCUGCUCUGGCUCUAUAGUGUCCUCAUUGUACAUGCUGUGUGUAUUUGUCACGUACACAGCGCAUGCAAUGUGGACAUAAUGGAGCUCAAUUUACACCUGAUAAGGA
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|
Structure | 10 20 30 40 50
UUGUGACCUCUCUGCUC- -| A U CA UAUUU
UG GCUCUAU GUGUCC CAUUGUA UGCUGUGUG \
AC CGAGGUA UACAGG GUAACGU GCGACACAU G
AGGAAUAGUCCACAUUUA U^ A U AC GCACU
110 100 90 80 70 60 |
Deep sequencing |
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|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-460-P2_5p |
mirBase accession | None |
Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
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|
Star sequence |
Cli-Mir-460-P2_3p* |
mirBase accession | None |
Sequence |
35- CACAGCGCAUGCAAUGUGGACA -57
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|