MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-460-P2

Family name MIR-460 (all species)
Seed CCUCAUU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-460-P1 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Gmo-Mir-460-P2  Lch-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Tni-Mir-460-P2a  Tni-Mir-460-P2b  Xla-Mir-460-P2c  Xla-Mir-460-P2d  Xtr-Mir-460-P2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LepOcu1)
LG7: 21682084-21682141 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAGAAGAAUACAUAAGGCUUCACAGUUUCCUCAUUGUACAUGCUGUGUGCCUUCUCGGUACACGCACAGCGCAUACAAUGUGGACAUUGUGGGGUUCUGUCCAGCUUUGUUCAAU
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Structure
        10         20        30        40        50         
AGAAAGAAGAAUACAUAA-|          U   U       CA         CCUUCU 
                   GGCUUCACAGU UCC CAUUGUA  UGCUGUGUG      \
                   UUGGGGUGUUA AGG GUAACAU  GCGACACGC      C
UAACUUGUUUCGACCUGUC^          C   U       AC         ACAUGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-460-P2_5p

mirBase accessionNone
Sequence
0- UCCUCAUUGUACAUGCUGUGUG -22
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Star sequence

Loc-Mir-460-P2_3p*

mirBase accessionNone
Sequence
37- CACAGCGCAUACAAUGUGGAC -58
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