MirGeneDB ID | Loc-Mir-460-P1 |
Family name |
MIR-460 (all species) |
Seed |
CUGCAUU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-460-P2
|
Orthologues |
Aca-Mir-460-P1
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Dre-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Mal-Mir-460-P1
Mdo-Mir-460-P1
Mun-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tgu-Mir-460-P1
Tni-Mir-460-P1
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xtr-Mir-460-P1
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (LepOcu1) |
LG9: 23488493-23488550 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUCUCCUUUGAAGUUAGGCUUUACAGCUCCUGCAUUGUACACACUGUGUGUAUCAUUUCUAUAUGCACAGCGCAUACAAUGUGGAUGUUGUAUUGCCCACUAACUGCAUCACCUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAUCUCCUUUGAAGUUA- UU -| U CACA GUAUCAU
GGC UACAGC UCC GCAUUGUA CUGUGU \
CCG AUGUUG AGG UGUAACAU GACACG U
UUUCCACUACGUCAAUCAC UU U^ - ACGC UAUAUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-460-P1_5p |
mirBase accession | None |
Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
Star sequence |
Loc-Mir-460-P1_3p* |
mirBase accession | None |
Sequence |
37- CACAGCGCAUACAAUGUGGAU -58
Get sequence
|