| MirGeneDB ID | Xla-Mir-460-P1b |
|---|
| Family name |
MIR-460 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-460-P1a
Xla-Mir-460-P2c
Xla-Mir-460-P2d
|
|---|
| Orthologues |
Aca-Mir-460-P1
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Dre-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Loc-Mir-460-P1
Mal-Mir-460-P1
Mdo-Mir-460-P1
Mun-Mir-460-P1
Neu-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tgu-Mir-460-P1
Tni-Mir-460-P1
Xtr-Mir-460-P1
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Osteichthyes
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030735.1: 3951266-3951324 [+]
UCSC
Ensembl
|
|---|
| Seed |
CUGCAUU |
|---|
Precursor
(pre-Mir +30nt flank) |
ACCCCAAAUGAAACACAUGGCUUUAUAGAGCCUGCAUUGUACACACUGUGUGUGUAUCUCAGACUUGCACAGCGCAUACAAUGUGGAUGCUAUAUGAGUCACAAUCAACUCCAACAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCCCAAAUGAAACACA- -| AGC UG CACA UGUAUC
UGGCUU UAUAG C CAUUGUA CUGUGUG \
ACUGAG AUAUC G GUAACAU GACACGU U
UCUACAACCUCAACUAAC U^ GUA GU ACGC UCAGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-460-P1b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
|---|
| Co-mature sequence |
Xla-Mir-460-P1b_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CACAGCGCAUACAAUGUGGAUG -59
Get sequence
|
|---|
