| MirGeneDB ID | Mdo-Mir-460-P1 |
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| Family name |
MIR-460 (all species) |
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| Seed |
CUGCAUU |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-460
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-460-P1
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Dre-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Loc-Mir-460-P1
Mal-Mir-460-P1
Mun-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tgu-Mir-460-P1
Tni-Mir-460-P1
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xtr-Mir-460-P1
|
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| Node of Origin (locus) |
Osteichthyes
|
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| Node of Origin (family) |
Osteichthyes
|
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Genome context
(monDom5_add) |
6: 197334861-197334917 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGAGGGGGGACACACCUGACUUUAUAGAACCUGCAUUGUACACACUGUGUGUUUUCAUUCCCAUGCACAGCGCAUACAAUGUGGAUACUAUAAGAGUCACUGACAGCAUCAGUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGAGGGGGGACACACCU -| AAC UG CACA GUUUUC
GACUU UAUAG C CAUUGUA CUGUGU A
CUGAG AUAUC G GUAACAU GACACG U
CCGUGACUACGACAGUCA A^ AUA GU ACGC UACCCU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Mdo-Mir-460-P1_5p |
| mirBase accession | MIMAT0012758 |
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| Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-460-5p
|
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| Star sequence |
Mdo-Mir-460-P1_3p* |
| mirBase accession | MIMAT0026945 |
|---|
| Sequence |
36- CACAGCGCAUACAAUGUGGAU -57
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-460-3p
|
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