MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-460-P1

Family name MIR-460 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-460-P2 
Orthologues Aca-Mir-460-P1  Ami-Mir-460-P1  Cli-Mir-460-P1  Cpi-Mir-460-P1  Dre-Mir-460-P1  Gga-Mir-460-P1  Gja-Mir-460-P1  Gmo-Mir-460-P1  Lch-Mir-460-P1  Loc-Mir-460-P1  Mal-Mir-460-P1  Mdo-Mir-460-P1  Mun-Mir-460-P1  Neu-Mir-460-P1  Oan-Mir-460-P1  Sha-Mir-460-P1  Spt-Mir-460-P1  Tgu-Mir-460-P1  Tni-Mir-460-P1  Xla-Mir-460-P1a  Xla-Mir-460-P1b 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(xenTro9_add)		 chr6: 3768597-3768655 [-] UCSC Ensembl
Seed CUGCAUU
Precursor
(pre-Mir +30nt flank)		 
ACCUCAAUUGGAACACAUGGCUUUAUAGAGCCUGCAUUGUACACACUGUGUGUGCACCUCAGACUUGCACAGCGCAUACAAUGUGGAUGCUAUAUGAGUCACAAUCAACCGCAACAUCU
Get precursor sequence
Structure
        10         20         30        40        50         
ACCUCAAUUGGAACACA-      -|    AGC UG       CACA       UGCACC 
                  UGGCUU UAUAG   C  CAUUGUA    CUGUGUG      \
                  ACUGAG AUAUC   G  GUAACAU    GACACGU      U
UCUACAACGCCAACUAAC      U^    GUA GU       ACGC       UCAGAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-460-P1_5p
mirBase accessionNone
Sequence 
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
Star sequence

Xtr-Mir-460-P1_3p*
mirBase accessionNone
Sequence 
37- CACAGCGCAUACAAUGUGGAUG -59
Get sequence