| MirGeneDB ID | Dre-Mir-460-P1 |
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| Family name |
MIR-460 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-460
|
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| Paralogues |
Dre-Mir-460-P2
|
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| Orthologues |
Aca-Mir-460-P1
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Loc-Mir-460-P1
Mal-Mir-460-P1
Mdo-Mir-460-P1
Mun-Mir-460-P1
Neu-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tgu-Mir-460-P1
Tni-Mir-460-P1
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xtr-Mir-460-P1
|
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| Node of Origin (locus) |
Osteichthyes
|
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| Node of Origin (family) |
Osteichthyes
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Genome context
(danRer11) |
chr2: 2301366-2301424 [-]
UCSC
Ensembl
|
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| Seed |
ACAGCGC |
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Precursor
(pre-Mir +30nt flank) |
AUUUUCAGAUAUGCUGUGGACUCCUCGGCUCCUGCAUUGUACACACUGUGCGGAAAACAUGGACAUGCACAGCGCAUACAAUGUGGAUGCUGUGGAGCCCAGACACUUCUGUUGCAGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUUUCAGAUAUGCUGU-- A U -| U CACA GAAAAC
GG CUCC CGGC UCC GCAUUGUA CUGUGCG \
CC GAGG GUCG AGG UGUAACAU GACACGU A
GAGACGUUGUCUUCACAGA C U U^ - ACGC ACAGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Mir-460-P1_5p* |
| mirBase accession | MIMAT0001887 |
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| Sequence |
0- CCUGCAUUGUACACACUGUGCG -22
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-460-5p
|
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| Mature sequence |
Dre-Mir-460-P1_3p |
| mirBase accession | MIMAT0001888 |
|---|
| Sequence |
37- CACAGCGCAUACAAUGUGGAUG -59
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-460-3p
|
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