MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-460-P2

Family name MIR-460 (all species)
Seed CCUCAUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-730
Paralogues Dre-Mir-460-P1 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Gmo-Mir-460-P2  Lch-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Tni-Mir-460-P2a  Tni-Mir-460-P2b  Xla-Mir-460-P2c  Xla-Mir-460-P2d  Xtr-Mir-460-P2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(danRer11)
chr7: 23362175-23362234 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAGGCGUCCAAUAAGGGGUUCUCCGGUCUCCUCAUUGUGCAUGCUGUGUGUCUUCAGUCUGGUCCUCACAGCGCCUGCAAUGUGGAGGCUAGGGGACUCAGAGACAGCAGAUAAACAA
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Structure
        10          20        30        40        50         
AGCAGGCGUCCAAUAAG--|       CG      U       CA       UGUCUUCA 
                   GGGUUCUC  GUCUCC CAUUGUG  UGCUGUG        G
                   CUCAGGGG  CGGAGG GUAACGU  GCGACAC        U
AACAAAUAGACGACAGAGA^       AU      U       CC       UCCUGGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-460-P2_5p

mirBase accessionMIMAT0003760
Sequence
0- UCCUCAUUGUGCAUGCUGUGUG -22
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Proposed targets TargetScanFish: dre-miR-730
Star sequence

Dre-Mir-460-P2_3p*

mirBase accessionNone
Sequence
38- CACAGCGCCUGCAAUGUGGAGG -60
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