| MirGeneDB ID | Dre-Mir-460-P2 |
|---|
| Family name |
MIR-460 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-730
|
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| Paralogues |
Dre-Mir-460-P1
|
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| Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
Xtr-Mir-460-P2
|
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| Node of Origin (locus) |
Osteichthyes
|
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| Node of Origin (family) |
Osteichthyes
|
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Genome context
(danRer11) |
chr7: 23362175-23362234 [+]
UCSC
Ensembl
|
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| Seed |
CCUCAUU |
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Precursor
(pre-Mir +30nt flank) |
AGCAGGCGUCCAAUAAGGGGUUCUCCGGUCUCCUCAUUGUGCAUGCUGUGUGUCUUCAGUCUGGUCCUCACAGCGCCUGCAAUGUGGAGGCUAGGGGACUCAGAGACAGCAGAUAAACAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAGGCGUCCAAUAAG--| CG U CA UGUCUUCA
GGGUUCUC GUCUCC CAUUGUG UGCUGUG G
CUCAGGGG CGGAGG GUAACGU GCGACAC U
AACAAAUAGACGACAGAGA^ AU U CC UCCUGGUC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-460-P2_5p |
| mirBase accession | MIMAT0003760 |
|---|
| Sequence |
0- UCCUCAUUGUGCAUGCUGUGUG -22
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-730
|
|---|
| Star sequence |
Dre-Mir-460-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CACAGCGCCUGCAAUGUGGAGG -60
Get sequence
|
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