MirGeneDB ID | Aca-Mir-460-P2 |
Family name |
MIR-460 (all species) |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-460b
|
Paralogues |
Aca-Mir-460-P1
|
Orthologues |
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
Xtr-Mir-460-P2
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (anoCar2) |
GL343403.1: 879933-879991 [-]
UCSC
Ensembl
|
Seed |
CCUCAUU |
Precursor (pre-Mir +30nt flank) |
CAUGGGAUGCUCCUGCCGGACUCCAUCUUGCCCUCAUUGUACAUGCUGUGUGUAUUCCUUUGGCGUACACAGCGCAUGCAAUGUGGACAGGAGGGAGGCCGAAAGUCGACGGACCAUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUGGGAUGCUCCUGCC--| A A C U CA UAUUCC
GG CUCC UCUUG CC CAUUGUA UGCUGUGUG \
CC GAGG AGGAC GG GUAACGU GCGACACAU U
AUUACCAGGCAGCUGAAAG^ G G A U AC GCGGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-460-P2_5p |
mirBase accession | MIMAT0021972 |
Sequence |
0- CCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
Star sequence |
Aca-Mir-460-P2_3p* |
mirBase accession | MIMAT0021973 |
Sequence |
37- CACAGCGCAUGCAAUGUGGACA -59
Get sequence
|