| MirGeneDB ID | Xla-Mir-460-P2d |
|---|
| Family name |
MIR-460 (all species) |
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| Seed |
CCUCAUU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xla-Mir-460-P2c
|
|---|
| Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Xtr-Mir-460-P2
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030739.1: 72717056-72717114 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAUUCUGGAUUCUGAAAUGACUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAACUACUUCUCUUACACAGCGCAUGCAAUGUGGAUAUAUUGGAUGUCAAAAGCAACUUCAGUGUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUUCUGGAUUCUGAAA- -| CAU U CA UAACUA
UGAC UCUA UGUCC CAUUGUA UGCUGUGUG \
ACUG AGGU AUAGG GUAACGU GCGACACAU C
UUUGUGACUUCAACGAAA U^ UAU U AC UCUCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-460-P2d_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
|---|
| Co-mature sequence |
Xla-Mir-460-P2d_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CACAGCGCAUGCAAUGUGGAUA -59
Get sequence
|
|---|
