MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-460-P2d

Family name MIR-460 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-460-P1a  Xla-Mir-460-P1b  Xla-Mir-460-P2c 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Gmo-Mir-460-P2  Lch-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Xtr-Mir-460-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Osteichthyes
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030739.1: 72717056-72717114 [+] UCSC Ensembl
Seed CCUCAUU
Precursor
(pre-Mir +30nt flank)		 
AAUUCUGGAUUCUGAAAUGACUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAACUACUUCUCUUACACAGCGCAUGCAAUGUGGAUAUAUUGGAUGUCAAAAGCAACUUCAGUGUUU
Get precursor sequence
Structure
        10         20         30        40        50         
AAUUCUGGAUUCUGAAA-    -|   CAU     U       CA         UAACUA 
                  UGAC UCUA   UGUCC CAUUGUA  UGCUGUGUG      \
                  ACUG AGGU   AUAGG GUAACGU  GCGACACAU      C
UUUGUGACUUCAACGAAA    U^   UAU     U       AC         UCUCUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Mature sequence

Xla-Mir-460-P2d_5p
mirBase accessionNone
Sequence 
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
Co-mature sequence

Xla-Mir-460-P2d_3p
mirBase accessionNone
Sequence 
37- CACAGCGCAUGCAAUGUGGAUA -59
Get sequence