MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-460-P2

Family name MIR-460 (all species)
Seed CCUCAUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-460-P1 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Gmo-Mir-460-P2  Lch-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Tni-Mir-460-P2a  Tni-Mir-460-P2b  Xla-Mir-460-P2c  Xla-Mir-460-P2d 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(xenTro9_add)		 chr8: 44862163-44862221 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUCUGGAUUCUAAAAUGACUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAUCUAUUUCUCUUACACAGCGCAUGCAAUGUGGAUAUAUUGGAUGUCAAAAGCAACUUUAGUGUUU
Get precursor sequence
Structure
        10         20         30        40        50         
AAUUCUGGAUUCUAAAA-    -|   CAU     U       CA         UAUCUA 
                  UGAC UCUA   UGUCC CAUUGUA  UGCUGUGUG      \
                  ACUG AGGU   AUAGG GUAACGU  GCGACACAU      U
UUUGUGAUUUCAACGAAA    U^   UAU     U       AC         UCUCUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-460-P2_5p
mirBase accessionNone
Sequence 
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
Star sequence

Xtr-Mir-460-P2_3p*
mirBase accessionNone
Sequence 
37- CACAGCGCAUGCAAUGUGGAUA -59
Get sequence