| MirGeneDB ID | Xtr-Mir-460-P2 |
|---|
| Family name |
MIR-460 (all species) |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xtr-Mir-460-P1
|
|---|
| Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
|
|---|
| Node of Origin (locus) |
Osteichthyes
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(xenTro9_add) |
chr8: 44862163-44862221 [+]
UCSC
Ensembl
|
|---|
| Seed |
CCUCAUU |
|---|
Precursor
(pre-Mir +30nt flank) |
AAUUCUGGAUUCUAAAAUGACUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAUCUAUUUCUCUUACACAGCGCAUGCAAUGUGGAUAUAUUGGAUGUCAAAAGCAACUUUAGUGUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUUCUGGAUUCUAAAA- -| CAU U CA UAUCUA
UGAC UCUA UGUCC CAUUGUA UGCUGUGUG \
ACUG AGGU AUAGG GUAACGU GCGACACAU U
UUUGUGAUUUCAACGAAA U^ UAU U AC UCUCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xtr-Mir-460-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
|---|
| Star sequence |
Xtr-Mir-460-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CACAGCGCAUGCAAUGUGGAUA -59
Get sequence
|
|---|
