MirGeneDB ID | Xla-Mir-460-P2c |
Family name |
MIR-460 (all species) |
Seed |
CCUCAUU |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xla-Mir-460-P2d
|
Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Xtr-Mir-460-P2
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Osteichthyes
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030738.1: 44933548-44933606 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUUCCGGAUUUUUAUAUGACUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAUCUAUUUCUCUUACACAGCGCAUGCAAUGUGGAUAUAUUGGAUGUCAAAAGCAACUUCAUUGUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUUCCGGAUUUUUAUA- -| CAU U CA UAUCUA
UGAC UCUA UGUCC CAUUGUA UGCUGUGUG \
ACUG AGGU AUAGG GUAACGU GCGACACAU U
UUUGUUACUUCAACGAAA U^ UAU U AC UCUCUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-460-P2c_5p |
mirBase accession | None |
Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
Co-mature sequence |
Xla-Mir-460-P2c_3p |
mirBase accession | None |
Sequence |
37- CACAGCGCAUGCAAUGUGGAUA -59
Get sequence
|